Initial release of nf-core/bacass, created with the nf-core template. This pipeline is for bacterial assembly of next-generation sequencing reads. It can be used to quality trim your reads using Skewer and performs basic QC using FastQC. Afterwards, the pipeline performs read assembly using Unicycler and assesses assembly quality using QUAST. Contamination of the assembly is checked using Kraken2 to verify sample purity. The resulting bacterial assembly is annotated using Prokka. Furthermore, the pipeline creates various reports in the results directory specified, including a MultiQC report summarizing some of the findings and software versions
[1.0.0] - 2019-06-06 Initial release of nf-core/chipseq pipeline. Added Raw read QC (FastQC) Adapte...
The pipeline bacannot, is a customisable, easy to use, pipeline that uses state-of-the-art software...
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequence
lol_bacass pipeline is a revamped bioinformatics tool that is derived from the nf-core/bacass standa...
[1.0.0] - 2020-06-01 Initial release of nf-core/viralrecon, created with the nf-core template. Thi...
v1.1.0 nf-core/bacass: "Green Aluminium Shark" 2019/12/13 Added support for hybrid assembly using N...
v1.0.0 - February 2023 Initial release of Arcadia-Science/seqqc, created with the nf-core template. ...
Initial release of the nf-core/nascent transcription processing pipeline made by @ignaciot @magruca ...
Initial release of nf-core/clipseq, created with the nf-core template. Pipeline summary Adapter and...
Main changes are conversion from nextflow DSL1 to DSL2. Additionally, the template and software was ...
Júlia Mir and Marta Sanvincente present the newly released nf-core pipeline nf-core/crisprseq. Nf-c...
This is basically a maintenance update that includes template updates, fixed environments and some m...
nf-core/atacseq v1.0.0 Initial release of nf-core ATAC-seq pipeline. nfcore/atacseq is a bioinform...
Initial release of nf-core/rnaseq! This release marks the point where the pipeline was moved from S...
WIP: A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequence
[1.0.0] - 2019-06-06 Initial release of nf-core/chipseq pipeline. Added Raw read QC (FastQC) Adapte...
The pipeline bacannot, is a customisable, easy to use, pipeline that uses state-of-the-art software...
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequence
lol_bacass pipeline is a revamped bioinformatics tool that is derived from the nf-core/bacass standa...
[1.0.0] - 2020-06-01 Initial release of nf-core/viralrecon, created with the nf-core template. Thi...
v1.1.0 nf-core/bacass: "Green Aluminium Shark" 2019/12/13 Added support for hybrid assembly using N...
v1.0.0 - February 2023 Initial release of Arcadia-Science/seqqc, created with the nf-core template. ...
Initial release of the nf-core/nascent transcription processing pipeline made by @ignaciot @magruca ...
Initial release of nf-core/clipseq, created with the nf-core template. Pipeline summary Adapter and...
Main changes are conversion from nextflow DSL1 to DSL2. Additionally, the template and software was ...
Júlia Mir and Marta Sanvincente present the newly released nf-core pipeline nf-core/crisprseq. Nf-c...
This is basically a maintenance update that includes template updates, fixed environments and some m...
nf-core/atacseq v1.0.0 Initial release of nf-core ATAC-seq pipeline. nfcore/atacseq is a bioinform...
Initial release of nf-core/rnaseq! This release marks the point where the pipeline was moved from S...
WIP: A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequence
[1.0.0] - 2019-06-06 Initial release of nf-core/chipseq pipeline. Added Raw read QC (FastQC) Adapte...
The pipeline bacannot, is a customisable, easy to use, pipeline that uses state-of-the-art software...
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequence